MorphServer job

Q:
I am trying to use Morph Server, my job ID: b198308-29491
It has been running for 5 days and is still not completed. Could you please check?

A:
The files in the folder of your jobs seems to indicate that it
finished successfully. You can find the files using

http://www.molmovdb.org/uploads/JobID

So yours would be in

http://www.molmovdb.org/uploads/b198308-29491/

Unfortunately, some of the other features of the web interface need
maintenance.

HiC-spector space complexity

Q:
I am currently running HiC-spector on mouse genome datasets with bin size 5kb. I noticed that it requires quite a lot of memory, so I was wondering if there were tests done on HiC-spector’s space complexity, as I couldn’t find such studies in the Supplementary Data.

A:
We didn’t do analysis explicitly. Because the contact maps are stored as sparse matrices, the memory won’t grow quadratically. In general, if calculation is done chromosome by chromosome, 5kb should be fine.