Supplementary data of Architecture of the human regulatory network derived from ENCODE data

Q:
I recently read the ENCODE paper "Architecture of the human regulatory network derived from ENCODE data", and I realized that the supplementary data will greatly help me to refine projects results, in particular those files related to the K562. Unfortunately, I found that all the supplementary data files are not available to download, since both of the following sites can’t be reached.

http://encodenets.gersteinlab.org
http://archive.gersteinlab.org/proj/encodenetsold

In particular, the second link is active, but if I try to download one of the files, it points to the first link and the download is interrupted. I am writing to ask if there are any other ways to access the files.

A:
http://encodenets.gersteinlab.org should be back up now. Let us know

Funseq2 Web Server

Q:
The Funseq2 Web Server goes down these days. Would it be available in the next few days?

A:
The Funseq2 web server is up and running now. It has some suspicious activity on the server recently and we are keeping on monitoring it.
If you are submitting your own query, please try to use the correct format, or it will shows ‘service unavailable’ service.

As an alternative, you can also download the whole genome annotations for both hg19 and hg38 from funseq3.gersteinlab.org, then use tabix to query.