I was trying to reproduce the DTE results as described in the paper "Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder". I am a registered user of synapse but was unable to find the data mentioned below and would really appreaciate your help in obtaining the same.
The supplementary method of this paper mentions the different covariates used for carrying out DGE and DTE using the nlme package. Would it be possible to obtain the seqPCs and SV values, particulary seqPCs (1-3, 5-8, 10-14, 16, 18-25, 27-29) and SVs (1-4) used in the lme model?
Additionally, could I obtain the final list of sample IDs that made it to the DGE/DTE analysis?
See the seqPCs we used in our analysis (attached)