I recently read the ENCODE paper "Architecture of the human regulatory network derived from ENCODE data", and I realized that the supplementary data will greatly help me to refine projects results, in particular those files related to the K562. Unfortunately, I found that all the supplementary data files are not available to download, since both of the following sites can’t be reached.
In particular, the second link is active, but if I try to download one of the files, it points to the first link and the download is interrupted. I am writing to ask if there are any other ways to access the files.
http://encodenets.gersteinlab.org should be back up now. Let us know
I am looking for an easy-to-handle application to analyse collaborative networks in science, and I am very interested by Pubnet, that you published quite a while ago. Unfortunately, event if it looks very simple to use the web interface, after submitting a query with a author name, I always have a page indicating the pubmed xml was generated, but it is never analysed. It always blocks as this: (see image)
We’ve managed to revive pubnet. Please check it out.
image 2 1
screen shot 2019 07 12 at 2.49.53 pm
I tried to use the 3V (http://3vee.molmovdb.org/) server developed at your lab but I was not able to connect to it. Is the server still running? Would you help me find a way to run it?
It was up but unresponsive. It should be working now.
We could not access your 3V server listed in your paper below.
Link to such calculation of protein volume in the presence of probe with
Should be up now. We had to power down all our machines on Monday and
3vee went up but it was in a hung state.
I was wondering if asco.gersteinlab.org is still available or having issues?
It should be back online now.
Sorry for the inconvenience.