We are trying to replicate some results using the bulk RNA-seq datasets available from the PsychENCODE consortium. We currently have access to the transcript RSEM count data from reads aligned to hg19. We were wondering if the same data was available for reads aligned to hg38 and if so, how we could access that data?
Sorry, we currently don’t have the transcript RSEM count data from reads aligned to hg38.
I am studying your publication in Science (Comprehensive functional genomic resource and integrative model for the human brain, Science 362,1266(2018) with great interest. As a quantitative geneticist, I found it very relevant to the study of complex genetic traits. Therefore, I am writing this note to request your assistance inorder get your software/algorithm for Regulatory Genetic Network modeling and Integrative deep learning model (DSPN) so that we could implement them at NIH supercomputer system and conduct some integrative genomic modeling work in the area of brain/neuropsychiatry.
Best to see resource.psychencode.org. Specifically — you can find the matlab codes "7. Matlab code and formatted data for
the DSPN" on http://resource.psychencode.org/