Daily Archives: July 12, 2019

pseudoPipe

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Q:
We are interested in using PseudoPipe for
identifying pseudogenes. I downloaded the software, but the program requires
older version of blast software including blastall and formatdb. Both
programs are replaced by newer version of the blast software, and are not
available to download from NCBI website. I am wondering if you could change
PseudoPipe to accommodate the new version of blast.

A:
Thank you for your suggestion. In the mean time, you can find the correct versions of fasta and blast freely available online. For easing the user experience we provide a link to the two packages on the website http://pseudogene.org/pseudopipe/ .

MolmovDB job ID b956969-31750

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Q:
Could you please have a look at my submission from yesterday and tell me what I did wrong that they job does not finish?

http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b956969-31750

A:
The server is running fine. Please follow the tutorial vedio for input file preparations. We are not responsible for user’a input files that are not compatible with the original script of the server.

We do not run jobs for those users, given that the server runs fine as it is originally supposed to be. There’s FAQ and tutorial I made on the webpage that you should follow.