We are interested in using PseudoPipe for
identifying pseudogenes. I downloaded the software, but the program requires
older version of blast software including blastall and formatdb. Both
programs are replaced by newer version of the blast software, and are not
available to download from NCBI website. I am wondering if you could change
PseudoPipe to accommodate the new version of blast.
Thank you for your suggestion. In the mean time, you can find the correct versions of fasta and blast freely available online. For easing the user experience we provide a link to the two packages on the website http://pseudogene.org/pseudopipe/ .