I have a question about the following excerpt from page 37 of the supp.
"In this paper, we mainly present a TF-centric analysis. We have also
analyzed other types of genomic contexts, such as gene-centric contexts, to
reveal the effect of context-specific TF co-associations to gene expression,
as well as chromatin state contexts to reveal relationships of TF
co-associations to various enrichments of chromatin marks. We plan to
present these results in a future publication.”
Were those results ever published? If so could you please point me to them.
I’m looking for an updated regulatory networks based on ENCODE data.