I hare read with great interest you
recent paper "Classification of human genomic regions based on
experimentally determined binding sites of more than 100
I am interested in one specific genomic region that I am studying. Based on
the available data in the UCSC browser I believe that this region is an
Enhancer, since it contains the characteristic epigenetic marks, HS-DNA
sites, and binding of a few transcription factors.
I have tried to find the predictions done in your paper for that specific
region. However I have not found a link to the predictions done (maybe I
have just missed it). I think my region should be a BAR and a DRM. Since you
have screened Chip-Seq data from a large number of Transcriptional
regulatory Factors I would be highly interested to know which specific
transcription factors bind to the region. Additionally it would be great to
known if this region belongs to the set of DRM in which you identified a
potential target gene.
Are the results from you study available for download? If not would it be
possible to get the results for a specific region?