I am using your pseudogene dataset of rice to do some analysis. However, I found that you did not mention which Rice genome version you used for data analysis, so I cannot anchor the pseudogenes to the genome I used. Would you please give the information.
As I understand you are using the pseudogenes described in this paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2708354/ . The Data source section of the paper highlights the fact that the annotations were done on the Rice genome version 5 from TIGR. You can find all the information regarding the rice genome version 5 at ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa .