FunSeq2 encountered issues processing whole-genome data

Q1:
I am attempting to use FunSeq2 to complete analysis on whole-genome data, and unfortunately have encountered issues. As there is no contact listed in the documentation, I thought I would try contacting you to inquire about troubleshooting. After loading a BED file in the appropriate format, a message is returned stating that the requested page is unavailable due to a server hiccup.

A1:
Could you send me a few lines of your input ? or id provided by the website ?

Q2:
The ID provided by the website is: 201511510325290607. I’ve also included a few sample lines from my input below. Please let me know if I can provide any further information.

chr1,203214078,203214078,T,C,98-22532-1

chr1,203275292,203275292,C,G,06-14634-1

chr1,203808954,203808954,C,T,06-14634-1

A2:
Your input format is different from the usual BED format. Could you separate the fields with tab (instead of comma) and try again ? The last column will be treated as sample name.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s