Q:
I’m currently working on reasoning with ontologies, and found in big
interest in reading your paper about reasoning of the pseudogene set.
I’m particularly interested in the time you give for the reasoning to
complete, since performance is my biggest issue. So I wanted to ask
you what was the size of the data you used, since the pseudogene set
does not seem to be available online anymore.

A:
The pseudogene data set used in this paper can be found at:
http://www.pseudogene.org/sdpgenes/all_pgenes/, which is based on
Ensembl genome release 48. There are 2,294 duplicated pseudogenes and
10,187 processed pseudogenes, in chromosome 1-22, X and Y. Hope this
helps.