Query about QTL calling from Wang et al PsychEncode paper


I have a quick query about the Wang et al paper from the PsychENCODE study.
Were the QTLs identified from all the samples or the control samples only?
I’ve checked the paper, online resources and the supplementary methods but can’t seem to work this out.

The QTLs were identified from both control and disease samples. You could find the sample information in Table S11. Summary of dataset.

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