Q:
Hello. I read your article in PLoS Computational Biology titled "Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data". It is very interesting and nice study. I really love it!!

Would it be possible to obtain your data and networks that you have used in this article? I would like to add our own data to expand the networks.

I apologize for this sudden request, but I really would like to work with your networks.

Thank you very much for your time. I am looking forward to hearing from you soon.

A:
check out modencode.org where you can download different versions of the networks.

In additional to the link sent by Mark, which provides the most
updated raw data we are using, you can also find processed regulatory
interactions here: http://archive.gersteinlab.org/proj/mirnet/

Since the data is keep being updated, the new data from modENCODE
website might be slightly different from the one used in the paper.